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Emerging from a wormhole, John Crichton is brought on board a bio-mechanoid ship, Moya, whose crew consists of convicts trying to escape the 'Peacekeepers'.
Rygel "borrows" a priceless crystal to impress the Tavleks—a battle-scarred renegade species whose real business is holding hostages for ransom.
Moya rescues two ilanic scientists from their disintegrating spacecraft, but their transport pod exposes Crichton to a mysterious force that jolts him back and forth in time.
Moya's crew is forced to land on a swampy, earth-like (Dagobah-like, as Crichton refers to it! LOL!) planet to try to muffle a tracking signal.
'Space Debris' invades Moya, but this is no ordinary debris!
Crichton works hard to free D'Argo and Zhaan from a root that enslaves the inhabitants of the planet on which it is grown.
The Crew discovers a derelict Peacekeeper Command Carrier, with a Sebacean Technician left on board.
On a mysterious planet, Crichton is enticed by a 'fortune teller' to step inside his tent; once inside, Crichton's spirit is literally torn from his body, and he soon finds himself battling Crais' spirit. Zhaan must reawaken a dark side to help retrieve Crichton!
Moya's crew seeks out Namtar, a geneticist able to provide star charts to the crew's home worlds simply by examining their DNA. Namtar, however, has more nefarious motives!
Carrying out a routine maintenance check on Moya, D'Argo slips and is ejected into space. After his rescue, he begins to have flashbacks. Meanwhile, something is wrong with Moya . . .
While researching solar flares, Crichton's module is damaged, forcing him to land and to seek-out repairs. While the ship is repaired, he and Aeryn are confronted by two vicious Worf, errr, wolf-like Bounty Hunters.
While carrying-out training, Crichton and Aeryn's transport is caught and immobilized by 'The Flax'—an invisible drift-net controlled by Zenetan pirates. A former pirate offers to steer Moya clear of the net, for a small fee.
A Delvian sect tricks Moya's crew into traveling to its planet to arrange a meeting between its leader (Tahleen) & Zhaan, for Zhaan possesses a power that once enabled her to survive a tragedy. Zhaan's power may now serve to stop Tahleen from a similar tragedy.
When Moya unexpectedly starbursts, Crichton is forced to land on a planet where no mechanical devices function. The crew of Moya attempts a rescue, but such a rescue is difficult when nothing works and the locals expect Rygel (whom they believe their savior) to perform a miracle. Zhaan and Aeryn must retrieve the team before the locals turn on the stranded crew.
An unfortunate Starburst brings Moya's crew in contact with the Nebari . . . and Rygel's first Peacekeeper torturer (Captain Durka) who has been mind-cleansed. The same fate awaits an attractive young rebel: Chiana, upon whom John takes pity . . .
When John sees a wormhole with Earth at the end of it, he brings the Farscape Module into it. When he wakes, he finds himself in Sydney, Australia . . . or is it?
Moya misunderstands a conversation with the crew and attempts a Starburst, however, she is too weak to complete it and ends up caught in mid-Starburst. The crew must work together to get Moya to complete the Starburst before Moya 'splits' under the pressure exacted by remaining in a state of flux.
A group of 'Black Ops' Commandos comes on board with a mysterious cargo: a virus that can infect a carrier and multiply at an astounding rate. The crew, pretending to be Peacekeepers, must work with the Commandos to contain the virus before it escapes and infects the entire system.
Aeryn is in mortal danger after being stabbed. Chiana and John infiltrate a Peacekeeper base in order to find a tissue-sample that will save Aeryn. A Peacekeeper Tech, Gilina (who met and fell in love with John during a previous encounter) offers to help. The mission appears successful, but a half-alien/half-sebacean Peacekeeper called Scorpius captures John . . .
Although still recovering from her near-death experience, Aeryn is determined to rescue Crichton, who is now being tortured by Scorpius and Crais (who was summoned by Scorpius)!
Hiding from the Peacekeepers in an asteroid field, Moya and crew risk their lives to help save an alien: M'Lee
Still hiding among the Asteroid Field, Rygel escapes and boards Scorpious' ship in oder to make a deal to save himself and to sell-out Crichton and crew!